NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335066_0615442

Scaffold Ga0335066_0615442


Overview

Basic Information
Taxon OID3300034112 Open in IMG/M
Scaffold IDGa0335066_0615442 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)559
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003927Metagenome / Metatranscriptome461Y
F077210Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0335066_0615442_17_181F077210N/AMVVARAQAIEFYEQVRGLMSVELPSTLGRNFSYAGYVSTFIADADQVKSIIVSP
Ga0335066_0615442_202_558F003927AGGMATYTVTNKYLIDDFAVLQLLTPTELEVGQSITVAGVDATFNGTYTIRALPQYLYEGVDSEGDLLYDVNVPIANQVLYAKTAADVDRTAASGTLTSTPTCTWITATDIEDWLGIGTTTA

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