NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0055282

Scaffold Ga0335036_0055282


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0055282 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3020
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001964Metagenome610Y
F002227Metagenome580Y
F028148Metagenome192Y
F090064Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0055282_1428_1565F090064AGGAVKVYWTAFYGRSEYTFQGRNAKRDAHRLVKRFGGRVVREIIKSNE
Ga0335036_0055282_1979_2224F002227N/AMKLTIQSKTNAQTIVDLFNAIITGECETQGVKPLSIYDEDKHICSIVAANGEQILELIIEREQGDKLCPAFEGNPDDEKLL
Ga0335036_0055282_2475_2732F001964GGAGGMSRNLFAPPRFKVQISGAIGWSDLKERVVRFETLEFRARKEAETTARELNPGEYTQGRIRVVPVEVLEDYDVYPTAERTKANHSQ
Ga0335036_0055282_587_1186F028148N/AMKTIHQIIHEIQFFDPAVRAFDAHDLPQSVRAYLHHNYRMDARLTDDEQQLIETSFEHFADNLRESFQDDPRPDATRFYLFDDLSLYVRTNAGPELWADAQVFVVERILPAMRLTRLEADLMREIGMDDQVSEVREDFYSSFAHILHRDCGIPHCDAREHWNAWSNQLSDSACESIVLGGGESGRAEGIRFASEYSVNA
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