NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0050186

Scaffold Ga0335036_0050186


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0050186 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3195
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004231Metagenome447Y
F014489Metagenome262N
F020664Metagenome222Y
F047564Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0050186_2328_2702F014489AGGAGMEMKQQHYAILKRLHHGASSLKRFTDKDGEVGNQGFHYLRYLNDLQNFGYALEIGDVWHITGFGVAKLAEQKPRIAKERVAAGTTTETYDGADLKQSGIREGAFDFMKYPSKFGDNLTHPRKYV
Ga0335036_0050186_2826_3107F004231AGGAGMSVKPKDFQHEICVYLEGVGECLVCFDILSPGDELDADHSDDYEIDFSVFDEQDKHITYDITKKQYNHCENKAMDEMRDITTQWHKEWETCFD
Ga0335036_0050186_64_279F020664GGCGGMEKPEIKHNLIRFSEKEREIMRTIGGGNLSEGARICVMWGAHFWNLGLNTEMDLKHIGLVTVSSTDNYPHE
Ga0335036_0050186_947_1195F047564N/AMKPTPTLIDSEKVIPCPYLSQLKPYMQQETFLEYLTNHYALMAMNPKTIEQSRWRAKELKADFPTLPTLIANRLKELKNEMP
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