NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0046731

Scaffold Ga0335036_0046731


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0046731 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3331
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F003863Metagenome464Y
F015702Metagenome252Y
F060700Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0046731_1171_1425F060700AGGCGGMKTLRELAQEAGIDEKYFDRDFLMLDNRHAIMQDEKGLHLTDVMSWASFSPRTIGRKSNATAKGLQFQLGQYKVWMRQNEQKVG
Ga0335036_0046731_2227_2388F000821AGGAGGVNKEYLEAKFDLCINQAEKNIKEEEIAEAIKNLKRANSALSQLFGFEEETDDN
Ga0335036_0046731_2378_2551F015702AGGAGGMTIKEVELEYTVYNLVRLSEKVWGENAIEYLAGRLESVITYNQMKVLVDSLKEEANE
Ga0335036_0046731_2544_2795F001477AGGAGGMSNVYTIHPPKSDLILFYEVVEPDGDNTWGGADAEQCMQWLTLAPNNSRVLVSAWDSDEEDAHLVGQTIDITEIIQRAREIGR
Ga0335036_0046731_2865_3152F003863GGAGGMENREVSGVQAIHHRNYRRARDRALVRLSHLYADEYRRLLVEEREVDELEGKKWVGVIDNTRLTITTHTRANAVPDVAGRTDYDRENEGYDGGEA
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