NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0024363

Scaffold Ga0335036_0024363


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0024363 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4823
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000220Metagenome / Metatranscriptome1544Y
F007102Metagenome / Metatranscriptome357N
F018367Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0024363_1120_1593F007102GGAGMLDPISAFALAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKEKVAKEAVKDPKKKYSSDTSQAMSTVMQLHELNKAEEELKWHFINQGHSQLWSQILLERNSIVQRRRTQEILDARAAKNRKQEIDEAITMGLCILVAAAIFFLVAWGVIEMKGKL
Ga0335036_0024363_1577_1750F018367GGAMIDAIASAQIPWPNTETKIVLVCRVVLPSEKYGANEFLDKDGRVCRWVLETKNAGPH
Ga0335036_0024363_506_1123F000220AGGVSEETLNANSTLDKVLGYVDSPFKLIAILIMGVVAFAGYFVYTNQDLLIGAYKESKKIPSIAEDRVEDASAHLFKTTNATIVAVFKVNPMFGTRILYRAYAKDGRDKTNDGLDVGLFTNNAANNADVVKLMANEIPCGEYRTAQSEMGIWYINKGVTYTCRISVPPEPGRFVGQITVGWETEPENLESARTMLSIAATMLSRSKQ
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