NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0006776

Scaffold Ga0335036_0006776


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0006776 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9630
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F002287Metagenome / Metatranscriptome574Y
F004838Metagenome / Metatranscriptome421Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0006776_1074_1667F002287N/AMASQPQKLAYVDGKLGAPTSGQQTTRVLFNTIEAPGTTSSLTFFRTFQGLTNGQTNLTQNRLDSMESMVIKTIWLAQFTSAGAVSDFGVYQQQTVSIIVGNQTVVKNLPIQFNQGLNGQAFDRLHENAGVNTDLVNPPTSTFQTIQPVEIRLLTDIVIPPQVAFEVRIDSNSGVYGTGAVVCALSGYGKIFSAGNSF
Ga0335036_0006776_1685_2074F000710N/AMISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGLIFSSTTSAAPATLVNALQLRVTLTINNDVVIDDVVAHELGASVAAGITTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNVTVYYKNEI
Ga0335036_0006776_466_1071F004838N/AMITAQDKILHVANKLGLTSLKDMQASTGAVYDVDTELSGTIFGQAARHANPSVTNINENQFEVNEALLVETISFYVRGNDNVVRNFQKIYGSNAVIVFDLVIGNKRVIKETPIFAAGSPYTFANTGNVTEAVGEGVGSGYIPRHQVFMEGAGILIPPQVQWYVSYTIFNVVTGAIIAPTDGTALGCYLFGTKVLLNFNTSI
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