NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0002699

Scaffold Ga0335036_0002699


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0002699 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15431
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036233Metagenome / Metatranscriptome170Y
F044493Metagenome / Metatranscriptome154Y
F065784Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0002699_12973_13287F065784AGGAGMRTGSKPGPRDMVITGKVNEPIDLDQNLEEAVRKSISAAFWLEEADQGAAIEAVLLAKTMDEFPQHRHKIAPVLIALLSNLGCLNNRKQADLSPADMLAAIANG
Ga0335036_0002699_7163_7414F044493AGGAGMNNDLMSTMKWKELAEIEAYLDLPMDEWEQSPSKAKLAFAMQYMMAKRNNPGLTIDQAEAMTINELSEASGMDVVVPKEGTSA
Ga0335036_0002699_8211_8594F036233GAGGMNIGLVRSEIESAIILGGISKVYKYVPERPNPLCAIIEPDTEFITVYENQYDADYATNWKIMIIVPFATNETETENLDDTLDTLVPALWEYTTANKMTIDKPFILNVNNAKFLATNINISIDIEGGN
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