NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0002455

Scaffold Ga0335036_0002455


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0002455 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16140
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000220Metagenome / Metatranscriptome1544Y
F015839Metagenome / Metatranscriptome251Y
F016520Metagenome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0002455_1005_1385F015839AGGAMNASYTAHVATDLYNAGYSCDGHPFIAEQYYVVIENQAGRRFRHTAIFNGTQEVVCPESGDSYFPDLRQEAFAKAERLVARVNAALQSGKFLSPTFWEEIDPAYGSDEYAYQGTEAKRLFAEKAAA
Ga0335036_0002455_1936_2211F016520AGGAGMNPTPACPQGLTEYACEVEGVDLVCFLEYTPDEEGSLNSYGLLNEPGTYENLELVNAYVKGTDVDIGHLLLQYLVDHITTTALEDLKNDDL
Ga0335036_0002455_9183_9794F000220GGAMSDEKPADVLSKVLSYVDSPFKLFALILMAVFAFSGYFVWQNQELLMGAYKESKKMPSIVEDRVEDAAAHLFKTTNATIVAVFKVNPMFGTRVLYRAYTKEGRDKVNDGLDVGLFTQNAGNNSDVVKLMAGETPCGEYKSAQSEMGLWYIAKGVTYTCRVSVPPDPSRFVGQITVGWDNEPADIQVAKTMMEIAATMLSRSKQ

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