Basic Information | |
---|---|
Taxon OID | 3300034104 Open in IMG/M |
Scaffold ID | Ga0335031_0036625 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 3566 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F041730 | Metagenome | 159 | Y |
F044450 | Metagenome / Metatranscriptome | 154 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335031_0036625_2_463 | F041730 | AGGAG | MALPTSLSTATIIGTYVDLIGNPVRGSLTFVPQTILKETTQNIIIMPTSIVKTLDATGSFSITLPVTSDTDVTPQPFIYDLTENFSGGREFQIALPLSVAGTTQNLADLLPAVDSVTAASYVTTDQYQALLARYGEAEAIRVIVVDAEDYEANA |
Ga0335031_0036625_793_1008 | F044450 | N/A | MKAQILKSMIVNGRKLVAGDIVEVEGWRYIKSLSSNRYIKLIEDNAPKVVKEIVEEAEKPKATKKTKEVAN |
⦗Top⦘ |