| Basic Information | |
|---|---|
| Taxon OID | 3300034104 Open in IMG/M |
| Scaffold ID | Ga0335031_0016781 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5369 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (71.43%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000325 | Metagenome / Metatranscriptome | 1296 | Y |
| F006543 | Metagenome / Metatranscriptome | 370 | Y |
| F012108 | Metagenome / Metatranscriptome | 283 | Y |
| F064189 | Metagenome | 129 | Y |
| F104766 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335031_0016781_1389_1646 | F104766 | GAGG | MQWISFFEKQPEHGQGIWYYGEHIGVWAGEYSYSENDPFSPHLIFCHESPGLVDRMDAPWWMPDDGVMSRPIKPAKDYPEDYPNG |
| Ga0335031_0016781_1639_1851 | F064189 | GAGG | MAKNFRDLNTVEACNMNREQAMIYLINFFNSRMSAMSKNNVDKAKELVGLHEISASELVNKYVELVKSNA |
| Ga0335031_0016781_3039_3413 | F012108 | GGA | MIKVEMSVREALNMVSNCCNLEMFEKIVCALEMALGVNQRRMVTITGGLTLDNRIHSIKAIRQHTGWGLKEAKDWTDYLVGGWHYDKFVPAKSGAKQSITLKTPEAAEALLRDLTSLGCEGYLS |
| Ga0335031_0016781_3702_3953 | F006543 | AGG | MKKFSFAVDIVADELDRDSVVDSIRSCLTDALPGDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEQAGDAHDGKIAKEEAVA |
| Ga0335031_0016781_4588_5292 | F000325 | AGGAG | MKTADGNDKLGKGCVVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVVTEKNKIRSMILDAKRREKSIRWHERGDWFLNGELDLDYIANVTWACESILADGNTLPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEALAQGFKKFAWCDSDMKIAPKRPKNKAKADAWRKALPKLVVLNATKFVVCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |