NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0010418

Scaffold Ga0335031_0010418


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0010418 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6865
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053996Metagenome140Y
F074591Metagenome / Metatranscriptome119Y
F086842Metagenome110Y
F095177Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0010418_2352_2657F053996AGGAGMRTASEQLIQTTWMAEHKLFQNHDAVTPVDWAKVWDVIDVLDNGEFDGNQLVMVAVLEFLCGSDSVEVSLDEIANLPELERSAVVEALRLKWSKVEFQENL
Ga0335031_0010418_3430_3771F086842AGGAVNKADVGKVLAVAVAIDSRLGASDESAFRAKVEGWSLALSEAMDFEFARDAVGKHYKSSTDSIMPAHLNAMWTAHRSRQHEIDNVRAIGSSPRSQGMPDDVRAKLVELGLKRP
Ga0335031_0010418_5043_5165F074591AGGTGGMTNWNWTPRAKIIGTILQAIAVVGIGYVLFVGIWFALGGN
Ga0335031_0010418_5165_5386F095177AGGTGGMGFVPFSMERASLDEKHKIRKMLEYLGITHPAHQVEFMSALLGKTFDTTKMSRQDFMTLRSKIMNIQQTKDKA
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