| Basic Information | |
|---|---|
| Taxon OID | 3300034104 Open in IMG/M |
| Scaffold ID | Ga0335031_0010069 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6976 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (58.82%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010680 | Metagenome / Metatranscriptome | 300 | Y |
| F045716 | Metagenome / Metatranscriptome | 152 | N |
| F064680 | Metagenome | 128 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335031_0010069_2489_3034 | F010680 | N/A | MCSLLKEQRDYESEWVFKQVIVKLDQSEVRVCTLLAVERWLTKFGSVDRPNYAAGKKFGKLEPEINANIRANVAEWAVAKEYNLSWSVPWYPNELHTKRKNIPDVGDFEIRTIRTQNAIPFWKKDAGRTIFGVKVLDEEYFSIVEIYGSFKADDYMVDEFADASIGGWRVPIELIVESDN |
| Ga0335031_0010069_4867_5148 | F064680 | N/A | MKDSLLSELPNFVELVDEATSKVFNPSAAWFESLQFADYVAQLAGHLREEHGPDCVQEVAEKLILMAESYKDLAEHAMTIIDKSDARFKQYGA |
| Ga0335031_0010069_6350_6739 | F045716 | AGGAG | MSENSAIQINFKTKKDGMLINLRAQDGAELDLLLDAVSQRLAALVDLEKTVEGMAVVKDAFPGAVQVQGTTAAPRPVQAAPAGAPDCACGGGPMRFVPAGIAKSTGRPYKAFYACPKPQGQACQNKVTA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |