NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0008953

Scaffold Ga0335031_0008953


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0008953 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7391
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053851Metagenome140N
F103118Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0008953_5881_6543F103118N/AMILSVRNSKSFEQSVNKLQCEKIWFKGYREHELAPIINDFIKNSNFENYFITPDDLIIKPYQFDQLKNALHYHDIVSGWGVIRQNCTHTTITKPHNFLQQNIFKHQFTTNYLKNQQYNFSYKTHEINSLPNQIETAFTGWFYTGMKKHIWTQYPYECLNPPFASSDLMFSRRVLFDNKYKQICIKSANVIHISNSTTMPTDTSFFDMSTCFSNKSIIKTF
Ga0335031_0008953_6574_7242F053851N/AMHNFTIDYTDGLKIDNNYYDSEFAAGKESHYMVKTYFVHKKIKRSLQSHPDQLGITATIEELESTTDKTLLTVNNCNLNCWIQPSFAKHFVPYHVDIYYNCELYQSDIMDCKYKLVNFTLHPKDDRELYTWMNVIENFKKQMQCDISIKNDTVASTTEFDHIADVKYNTDDTNKQYYLGLHIGRFYQPNTQMPDINYHPDQLHNKNSLDIINDILYYYTTII
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