NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0001685

Scaffold Ga0335031_0001685


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0001685 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16644
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (78.12%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012767Metagenome277Y
F049573Metagenome146Y
F066715Metagenome126Y
F102618Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0001685_15129_15371F102618AGGAGMIANETSPAENEYLAAVAGLHEQTVSPAHKKPEPAVGDFVSGCTAGRRWSGRVEWVNDRGEICVNTDGSWVYVPVADITH
Ga0335031_0001685_16128_16364F049573N/AMVVALPEGRKLIGTAEAAKILGVSMGRIRQLALLDPADGGIQSWLAAPTARVFDEAEIRKRAKAKRTTGRKRGGFKAN
Ga0335031_0001685_4704_5078F012767GGAVRGVTATISLTAFRADWMTHMPMRALCERWTISRDQVIRLAVVWELPRRHDRKLRAKPVRQRDPTTTEIQQACIQIQATWSDDVREDRRVTKTQLVSLKRIPLDSETREHTAYDGDAHLWEANR
Ga0335031_0001685_61_417F066715AGGAGMADNIISRKNRDIDITLATATASATTLDLRDVAGAVVSFGTMSTNASTLQMWVGTTPAGTFRRLYKADGSVADLTLAASSTDGRAYALPDEVFGVEYLKIVSATTNSTGTVGVVMLKS
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