NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0001668

Scaffold Ga0335031_0001668


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0001668 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16755
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (21.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016000Metagenome / Metatranscriptome250Y
F066464Metagenome / Metatranscriptome126N
F095483Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0001668_2233_2619F016000N/AMTSKEFVLWLKGFTEGVHEFNITPKQWDLLKDKLTEVKDEAPIGFPFGVPNTAPMTNPLITPSPTNPYRPYEVYCGDTNGTTITTTPNVGGSITIANPPFGFGVTSTAYGYPSGSAWHYTNGKTHNED
Ga0335031_0001668_562_1032F066464GAGMRTKGQGYMVMNPNPKGGGWASAMGWAAKYYQQNQTQKNPNFDTIGKLVIQNYAKDLGSGVFYGWDVISADEMDDVYLFQLRNRENSKLRVYITLGRELQTSDLENNLYQMYQCYMHDDDGKWEEKFWLDANRINYKEFWRLIENIVDKHYPILPF
Ga0335031_0001668_8506_8733F095483N/AMKKFLQWWKVAGQFWGFVLLIGILCGIMIGFMDEMRTNGWISVLWLVVFFGGASWYAWQMRVHGWELPQNIKDTH
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