NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0001474

Scaffold Ga0335031_0001474


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0001474 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17794
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010542Metagenome / Metatranscriptome302Y
F026562Metagenome197N

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0001474_17277_17558F010542N/AMVIHSPIFSGSIIQDRNNAFADLSGSFTGSLTGSFRGTIDVQQASFENLIVNNSLSVSGSIKMTGSMDLTAGGYLVDGVNVLDSAIAFAIALG
Ga0335031_0001474_4453_5397F026562N/AMAEVFVPLNRFQSVVTGLTGEPDEIYTTPAGVSSIVLSCQITNNSLVTQPVTIFVTSNKEIPVPQFGNVYSASNFISSSAGPFAVNGIEFLSRFSGSFESASLLLNANRQFLRKEIAAYTSNENNLSETPFTFISDYFEQNTLDDVDAIKYDIVNNTTIRTNKAAKAYFDKNGKSLIVSTEYSASIFALDYLKILSNQIIKNQSTTGSSDSPLLFQNAVTQSVLTGFNNGTAAGVSASIYLVNSLVDVIKETIEAPVFTEQEAVRLVTNVTIPPADSLSPVVSGKLVLEETYGFIVSGSTELTVVLSLLESANE
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