NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0082014

Scaffold Ga0335030_0082014


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0082014 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2373
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015718Metagenome / Metatranscriptome252Y
F078244Metagenome / Metatranscriptome116N
F081250Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0082014_1998_2372F015718AGGAVKIVPIIRDGKIVMDDINEQYPVTNVMWKYMDSMTLGEYLGSLGVDYKSYGFIKGFPRSFYLRIGLYEPGYVIDTNSHLYDSLVTVRDNDPWHRKFKVFPVGSNLYGNDVYYYFSLMAKGLSSYG
Ga0335030_0082014_3_347F078244N/AIRHYRILDEDAYDKVDKFIKNAVMADSQMELMKNRDSLILIVKTFMEAIGRKPYSDRTVEIHIDAVMSGSSRYVSRLDNPDIVTPGIGGKTNTSHMDVEDEDDDAAGKRLGYNL
Ga0335030_0082014_882_1931F081250N/AMNFNYRDFFIHNDDLHIIKEQLSIVDEMTSKEDALEPNAKAVWDMYQTENNLQKIADTLGINLTAVEKIIEICEKKFIENKTVAQIANEMKLTDNTIFNVLNNAIPDWERTQDRNFIKNAEEIYNLHKQGKNPEEIVNLINQNRKPYLQIKLDKVNLVLKIVDIAKKQMENDGVTNTYEIERQINHTITFPTINKLIKNLGIGEIRYKHKFTTEQDAFLLYSYLQRIGSVETTRQFNMKFSTNSNKLNIGYNAIRKRIKNTILKSNSESEISEYALELLRNYKNEYFSTVNIQDPKTKELLKNYTPPETIKGKDKTGTGTNRDMSAHLGTVQTNFNTMVTNLRNAHTIR
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