NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0035611

Scaffold Ga0335030_0035611


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0035611 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3784
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000903Metagenome / Metatranscriptome843Y
F001897Metagenome / Metatranscriptome620Y
F009883Metagenome / Metatranscriptome311Y
F025943Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0035611_1270_1428F009883GGAGMNEASIVIMCLIGGALWAVMSYSVGFKEGERQGYTRGRAVARHAVSADRKVK
Ga0335030_0035611_1_468F000903GGAGGMIDRIEEVQCMIAAISHCHDRSADHSSRIQRNLSWFEYVAQNAESMVSEWVVAKRLGYEYTPGITWDKSKADVGDHIEVKWSANPASNLWIQESDRHDRDVAVLVVGNSPKMHIVGWMPVAIAKKPRYRNASQNNWSVPQINLQPIETLERSNYAH
Ga0335030_0035611_2694_2870F025943N/AMDRLFAVIENDEVVNVVVGVEDSVVKANPGKYIEYTDGWKYPAGINGEAYFPAKPVNE
Ga0335030_0035611_653_1270F001897GGAMAAFMDGYEGNKERTDRWIATFPQGRLESHIVEFDFAKGYVLVQAKAWRNQEEIYPAGIDYAHGFLTAYSSKMARWMIEDTVTSALMRVMALVMGGTEKSTKETMEIVNASDVYDPWAIKHGDVPSYKTAAEAELSGTPSFGSSDDSWSADAIPGCSHGAMRWNQSKPEAPKSWGGYFCTEKVKEKQCKPVWYVLRSTGQWEPQL
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