NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0008930

Scaffold Ga0335030_0008930


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0008930 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7714
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018366Metagenome235N
F028739Metagenome190N

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0008930_4272_4937F018366AGGVVPSPVAIISPFDQKYWDRFGEGFIASIEALTVKPQEVILVTRARVDVPAWWKVVPYWDDRIWPCVNVGVREASAEWCTHLPVDDTMDPNFFDGLVLQGDAVNVRGRWDGGLCYGTPEQYKNLLNQQNNGMPGLAVIRRKTWLKIPYRSHKYVDWIHWCEMRSHNVEASFDSRCVWTWVRHDDALTAQRDEQAEQEVFNFRRLLESGRVIPGEDWPPKLAE
Ga0335030_0008930_4934_5554F028739N/AMILSDLKDRHKGEEIWVCGSGPSMDWVTPQFFNDKVVVSINDVGFWFGIADFYSASNYSKANPITAKRIDENPDRIFVTPDMDLEASDMTATHVGSGNHVTFRPHAPFWRPDIGWPTDPDVLVVGGTSAHIAMHLACYMGASQINLVGVDNGSIGGISNFGKYGDSKAINPEGWSQWFPIVVNKLRELYGVRFFRLQPSLELLIVE
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