NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0156768

Scaffold Ga0335029_0156768


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0156768 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1553
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022886Metagenome / Metatranscriptome212N
F030763Metagenome / Metatranscriptome184N
F053288Metagenome141N

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0156768_349_654F022886GGAMITIKNWDKLTRLFRSQIDIGESELYYEIIYYYPTLPSNEYYRITLSRISPPQQDHPHKDEYLMLCGVSEYWLNKKELENVDTVYEAIVDVVVRHNLKVRV
Ga0335029_0156768_656_967F030763GAGMLVIKNYKKIKNQYFGDWQIGRVDEMKECYALQAFNATTKKSITMAILREPMMDEAEYDTAYRISLVEDDKKPSNIIDDVIYHSVLEDMELFGESLVHYLNTL
Ga0335029_0156768_8_346F053288N/AMITIKNYNSDVGHGTFYGWDMKYALEDKDFYSFEFEHRNEQKRVYVLVHRNKLKSKKRTKHVVSEDLHEVYIQDMVSDKWRRTLNLTKPQLNKNAFYNWVESVIDDEYGLPF
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