NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0084681

Scaffold Ga0335029_0084681


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0084681 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2262
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001460Metagenome / Metatranscriptome690Y
F002387Metagenome / Metatranscriptome565Y
F007644Metagenome / Metatranscriptome347Y
F009685Metagenome / Metatranscriptome314Y

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0084681_1197_1382F001460GAGGMLGYEMADLNEMINAVHDAKLFYIRTPSDLIDKEPLVKSLEKTNDFLQGLWAEGYFDGYQ
Ga0335029_0084681_1399_1557F007644AGTAGMKLHLISLEQDLEENPASIHVVDIEGQIYATKHLLSVATDIMNESNERYINE
Ga0335029_0084681_2116_2262F009685AGGAGGMKMSDQYVDSVLAEAQKLLWGGSETENIQAHNLISKLIKDRMGEGEGPK
Ga0335029_0084681_985_1203F002387AGGAGGMASFLEDVNQMVIDACYQDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDKFVQSEFNKFYNLKEGDEDYLC
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