NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0058360

Scaffold Ga0335029_0058360


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0058360 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2812
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007751Metagenome / Metatranscriptome345Y
F010084Metagenome308Y
F010836Metagenome / Metatranscriptome298Y
F011075Metagenome / Metatranscriptome295Y

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0058360_1757_2173F010084N/ALDITEEVIKHLSSNVKTKIGVSSIDGVGVFAIRDIKQYEEVFPLWNYDSGIYLIPNDRLNEIPKEVVDLMDMYFINDECGYKVIRLFKGFNFTFHGFSYCNSAWPNKTKVNITNDGIAMENIKAGEEILEWYDENIKT
Ga0335029_0058360_22_234F007751N/AMNQIQELKSVIGKDVSQNQSPTCRARLVSVGKSNCTFESVPSPYDKFPKPEFVGVKYKVPNWIAWNSFFY
Ga0335029_0058360_245_778F010836N/AMATSNFHNVNASAIFAVQLENDFDYEDLVDNLKSELNNDSDYVDYGKTDNNELRSFPSRTLGSIRKYHQYKDFYVEVCVTPVIRSGYYSGVNLDWNVDYLINGDASYDSPDFYIDDIAHYGNLPKSKAIQYAKLAEKKAEKLKNEIVEKLEALYNDYSEKYGVTAVFSNGETIYHKL
Ga0335029_0058360_942_1193F011075N/AMRSFETHLGIIVGSHLNDAMIEVSINPQLAKKRLKFVKALTFFNEDLTKGVTDEYCNWLWNELFENQRWGAPYIKGTDYENHI
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