NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0052785

Scaffold Ga0335029_0052785


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0052785 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2977
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004978Metagenome / Metatranscriptome416Y
F006698Metagenome / Metatranscriptome366Y
F008493Metagenome / Metatranscriptome332Y

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0052785_1093_1470F006698AGGAGMRFYDELAVYERNGFDIIVDKSYEDMDPKDCFDDECFNLKEMYSDIESGNLDWFMLRVRVMVENIELSSQFLGGCLYKDAKEVLTDGTAEDLIAEALVEAKRDVYRLYKKFQDISWELDAEGATA
Ga0335029_0052785_1_216F004978AGGAGMITADTLEVLTSYSPQYLTKAAQNAGYRGPNFSSCKFVGITNGGQFCYMAVFQVEGGTDSTKVFLTYDHTED
Ga0335029_0052785_2580_2855F008493N/AMTSERGDSYIGLTRKSLPNTDKVVAERWRKHKSRAKNENRLWALYIYLKSGGLAMTWRHEVIAVIRGRKEAYAYERELVKLFEPELNDQYL
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