| Basic Information | |
|---|---|
| Taxon OID | 3300034102 Open in IMG/M |
| Scaffold ID | Ga0335029_0014323 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6071 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → unclassified Flavobacterium → Flavobacterium sp. ASV13 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015718 | Metagenome / Metatranscriptome | 252 | Y |
| F074416 | Metagenome / Metatranscriptome | 119 | Y |
| F078244 | Metagenome / Metatranscriptome | 116 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335029_0014323_125_577 | F015718 | N/A | VKIVPIIYDGRIVMDDINEKYPVTNVMWKYMDDMTLGEYLASLGVDIKSYGFIKGFPRSFYLRIGFYEPGYVITTNSHLYDSLVTVRDNDPWHRKFKVFPVGSNLYGNDVYYYFSLMAKGLSSYGNDIYNCYVHVTTVNGKSVYCVDVLN |
| Ga0335029_0014323_1265_1735 | F078244 | N/A | MLAVPFIEIIKLTGAFLNFLYIYVYMKDIINETFKKHLKLLHGRLNENFDEDAYDKVDKFIKNAVMADSQMELMKNRDSLILIVKTFMEAIGRKPYSDRTVEIHIDAVMSGSSRYVSRLDNPDIVTPGIGGKTNTSHMDVEDEDDDAAGKRLGYNL |
| Ga0335029_0014323_3887_4915 | F074416 | AGG | MGKIIINECNPFFEMEGKEGDVLYSFTGNCGLTKNSVLCDKTINLNEMYDTMLGDVKVFLFGGEFVSLIENVKGKSGITQLVKTYTFKKYGITIENVYNKIHGNTTSTTMTVDTLFNELKNRYGMMEMDWMYLYDNVRQFRTDDVEILDYMCNKILSNKIYEYFVVEYSLRTVGVVKKVKQFIRNKVSVDTSINFIKIEWNNGSRDMHLSDFLKNHKQWWGYMTRKQDRCDIRDYDVLLNGKSVTEVFPVYCPVFSNLRMNYTGIDFDNGKNNIRKCSEIAGYSDKGETWSFASIDRIDSNKGYSYDNIRIISHYANHLKNVGNIEQMRRLVRYMDKQNSYF |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |