| Basic Information | |
|---|---|
| Taxon OID | 3300034102 Open in IMG/M |
| Scaffold ID | Ga0335029_0000056 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 102543 |
| Total Scaffold Genes | 118 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 45 (38.14%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001732 | Metagenome / Metatranscriptome | 644 | Y |
| F028094 | Metagenome / Metatranscriptome | 192 | N |
| F059894 | Metagenome / Metatranscriptome | 133 | N |
| F060851 | Metagenome / Metatranscriptome | 132 | N |
| F080979 | Metagenome / Metatranscriptome | 114 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335029_0000056_10278_10499 | F060851 | GGAG | MKAILEFNLPEDQREFEIANQSKDMLCIIGNLEDTLRSYLKYGHQFKTPEEALEAIRARLHEEINIRRVNIHD |
| Ga0335029_0000056_11112_12065 | F001732 | N/A | MKKLLILFMALLLSGCFSTIKPAKQIDDNQKIIAKEEKKVDNTLVEIEKNDKGKKIQTSGLSIGIQHSLNQVTNAPVQVDTALKLNERVISIVGSPHIDETKRIKATVDLLNSALVEERKKGEELLAQRDDIINKLQKEKSELNQKYDDQLWQLTDKAKEVAKEADQNKAVLDSMSGMFGLNAVFWGLKKFFISALTTIIVFTVVFVLLRLLATVHPAAAAAFSIFNMLGSLIISILKALTPKAFELANFATKDKVEEFKSPLVKIVDVIQELKEKQKESPDRVYPLNELLKRFDKEMDSDEKDLIDQILKEQKWIK |
| Ga0335029_0000056_16407_16610 | F080979 | AGG | MQDDRPINMTKISQKEEKNYKLLKEGQDFQIGDLIHLVDDEYVKLNKDNQLLKTKVTKYNKALRKAK |
| Ga0335029_0000056_16810_17466 | F028094 | N/A | MKQQLEFDFRSPEEVARQRKIAEENEKVFEQMFSDDGYIYNKYVDFLLDLVPFRLAWKARYWPGNIRWWIKCKYQKIRYGVSDDDVYSLGYNIALFALPRLKYFKEKGKVGIPVCFLPNNFHLLEGDEQTAAEEKGVKEMEAVLDEMIFAFEYIIDGDKMCELPESVSFKGNDFDFNSEKSIEEKEDWKRYMEKANKLNERKENGLMLFAKYYDTLWI |
| Ga0335029_0000056_2999_3421 | F059894 | N/A | MKAQIQFITNSENYYDSPLLEVYVPSKTALKKFLETFKPKHRDPAEVMVDFIIFAHSAIKTVAIRNLEDRDYSQDLIAVEVRSPNIVEFVYKKDDGKTDWRKVDILEEDKYYVKGHDLNDDNSFKCFKKSNIVGGRIIKQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |