NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0060018

Scaffold Ga0335027_0060018


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0060018 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3035
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001338Metagenome / Metatranscriptome719Y
F002413Metagenome / Metatranscriptome561Y
F004790Metagenome / Metatranscriptome423Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0060018_1259_1762F002413N/ALLEWSQRPAEHINFADALKEAANHYMDYLGLDGNFFKEDFKVDNRDFLVHAGKFARRMDKDVFARHFANWCPVMKHHDQPSPETVVCSDWRYINELRVCQDILWEKGWKVRTIYVATAGVGPANDEELDSIAEIRASHLFDQEYIFRPNSRNQIMTEGRNLARSWRL
Ga0335027_0060018_1750_2064F004790N/AMETLNPETLRWAAKIGLSPERVAFLLACPKYTRTGRNDRPAFIKAENPNHHLQKLGDRYWFRLRRRGKDIVENIASDLATARKRRDEMLAAFDAGKPIPYISIK
Ga0335027_0060018_249_686F001338N/AMNIENNDRPPLTSISTAGTYKLKLIKPKFEKVKVWEDGTTSARLFFVDDKGFCLSKNFSSKYGKALAMLVGKFSGKFTEEIRLDATPAEFMQYISPACGQTILVGVEVEPNGEWQGKPQYKYKMTYPKGSQKPVVQEAPTENPPF
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