NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0049654

Scaffold Ga0335027_0049654


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0049654 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3403
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039035Metagenome164Y
F064671Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0049654_2_511F039035GAGMAFFQDFVITIDEAQLAAILADFYAVPTTERPNDFTPTNPSVVNTVNVAITPPIPTTGDLQPTIDFAQAIVAESVAEFGTQETPLVVTLLETLDDAGDLAGYLTRPVPAFWFGNIEIVMNGLTNAQRTAITNLDIGSQISVTKTFPAPSSPASVTQLMALEGISHDISPD
Ga0335027_0049654_511_1311F064671AGTAGGMSVVIPNCGTYTVELDYGSTTNFFILDDSLRGVLDNTLYVLDGTTDFQDVTAFVKGVSIRRGRQNRFRDPTGQASTATILIEDSDYRFSLVNESSPYWNTSKGRLGFELNSGVRISRNGVYLFVGVITQYSQSIEKPNRSVVTVNCSDALFTLNNRKIAQNPVVAQRSDERIAAVFDNEDLFTQPGQRQLETGIANLGNAPIDASSSILEYLLRINNSEQGRIFIKADGTFAFDRRLVGELENFDAILSDAGGTAIPYSSFEIVNT
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