| Basic Information | |
|---|---|
| Taxon OID | 3300034101 Open in IMG/M |
| Scaffold ID | Ga0335027_0025787 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4939 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001299 | Metagenome / Metatranscriptome | 727 | Y |
| F015856 | Metagenome / Metatranscriptome | 251 | Y |
| F030377 | Metagenome | 185 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335027_0025787_1038_1388 | F015856 | AGGA | MISEDTIEHYNTKLNIDLNNLKTLTPSQKDRVRHYGSQAEALLKSKDLAMFVHHYKFEIADNLGSIRGHTQEDNTQRVALCNELAGIDNFVNSLKRAVYWKNRVGNTNEVPNTTNN |
| Ga0335027_0025787_21_1010 | F030377 | N/A | MSIAESVIPMQEYNTSAARAEIQLGLLTATPRIGVKPDRLDFEMLQDGEAAIFILDSKFDPQKDIYQLPPPSGNLQFLEVAMNRIQQDTMAMVGMTTPTDVFNPEVMAAGNSGIKLQLALSPNQIIQDNTVRNSAEGLKEALWLVWRTLIQYGDDYGVKKLAQTFHPDKQPEFLDFLAWDDMNFCDRKQINLELALGMMSEENQLARLQIIQKCQSELYQAIQGMVAQNTLTPEIFKKVKKPFADTLYVLGVKDCDVYLPSDDEVMAMITQAKEAMKNKQPSPEDQKDIASAQLDTAKAQQIMAELSGQDAETQLDYMALAQGKPKVYS |
| Ga0335027_0025787_3818_4402 | F001299 | N/A | MSDINNPEYLDDSDPEKNYNFYRQDNGGMITNHNGMADKLLQNDDLYNSMKGDWKRTDYNKSKNILVTSGREDGKFYIRREQLNAKAIAEHCKNYRHAAEKGIPDPLAPIGEDGKLQHKWMELPKVVAIRISDDYFGGIPWDAIKHDRTLKAQFYRVVETEYPQYVCYPGGKLPIPVDVPYPTKKGQQRFFQGH |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |