NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0015659

Scaffold Ga0335027_0015659


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0015659 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6515
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009524Metagenome / Metatranscriptome316Y
F036677Metagenome169N
F082379Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0015659_2350_2781F009524N/AMTDLTILDAIATRLEAVTPPTGYALRNAWATPPESLPVVPAVVLFPGDDSISIGNGNRTTVLTVAIRLYLLPIPRMEDKYRDLYTWRAWLRTAFDGAVTISGNAVQVAVTATTLGTDTYADQEYLTVEATAEVTVFDTVAFTA
Ga0335027_0015659_3839_4102F082379AGGAGGMDTVKITLEGKYAGWTAELRKAVSARILLDLDSGDAPRALAAFAKLVVTHNFKGLDDKPCEDVLDAPVDALSQTLEAWGKANQPNPK
Ga0335027_0015659_4279_4773F036677GGAMRAAIVVEGQFDRNYDQLRLGFLKGSNPTAFKRLMTFATLNAARTLQKPMRDKAPRGETGNLRKKVLARKARFNRPAAVVGIKGGRKGVFYGWLVVGGQGQRRTTPNGTFTVKGVRPRPFVDQVVKQRANINRAVESYGKTVAAFLNSEPFRNTILKFRRGNQR
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