| Basic Information | |
|---|---|
| Taxon OID | 3300034101 Open in IMG/M |
| Scaffold ID | Ga0335027_0013109 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7154 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (78.57%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001872 | Metagenome / Metatranscriptome | 623 | Y |
| F002302 | Metagenome | 573 | Y |
| F003964 | Metagenome | 459 | Y |
| F007579 | Metagenome | 348 | Y |
| F010535 | Metagenome / Metatranscriptome | 302 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335027_0013109_2061_2264 | F007579 | AGG | MATPTKAQIDQQIGNATRELAPGTTWRYNEPGDGYQCLEWMDNPALQPTEAATMEKATELAANPPTL |
| Ga0335027_0013109_5408_5920 | F003964 | GGAG | VAEVSARVEVVGLKDALKTLNKIDKSLRREITKDYKKIVQPVIDDANKLVPTGVPLSGMARNWQTRSGFQILPWIPGMKQKIAAKINTRAIKEYSGNKTNVGTFGIQWKGATGTMFDTSMAGSLGRALTARYGSHSRVMWKAYEQRQSNVMSEMEQLVKRVMDEANRETA |
| Ga0335027_0013109_6835_7152 | F002302 | N/A | ATLTAVTGLRVINDATKLVSNSVYLDAPNFTTFAGNGNVVRLEFPVKVIGSGPAGLPVLRQILSIVATVLGSKIIVMGGRPSSLEIGGALYPCYDLDCAIQAQTS |
| Ga0335027_0013109_693_869 | F010535 | AGGA | MTDPQIFDYSVYTGVMDNGQEILVQIFTSPESGKYLMGQIAFRSASSSWGVPIPLEKR |
| Ga0335027_0013109_910_1350 | F001872 | AGCAGG | MNEFIKQLIHHSGNALWNNGSYGQRDMKGKPGSLSVHATGRAVDMSYRGDARHPQSSRKSALPFVEKLCANANELGIQMVIDYFPAPHGRAWRCDRQAWSKYTKPTVSGAPGGDWFHFEISPQAADSVIFVKTAFLKVFGEIPPKA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |