NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0012277

Scaffold Ga0335027_0012277


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0012277 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7394
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000847Metagenome / Metatranscriptome861N
F001129Metagenome / Metatranscriptome768Y
F006982Metagenome / Metatranscriptome360Y
F010464Metagenome / Metatranscriptome303N

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0012277_3022_3297F001129N/AMPTPILQQMLGQGGTMEFIDGTVTGKNYDFLVVNTAATFTTLTGTGSENLLTAYNFSGKSLSAGIVISGRNGGKITAVTPSAGSVIGYTFL
Ga0335027_0012277_3325_3828F000847N/AMSWIKIKQALLDLANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSASTDAGTLDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQVAQDFISALTNDPSEDWTLSSSVSLTRFVESRDDRTAGWQATMTFEIPYSHSVCEIPT
Ga0335027_0012277_7123_7392F006982N/ALKSANLSSYTNRYDQFSIAVGSLETGSYRYEVYDTNSTVAAALAVVETGLAFVQTATVGFNTYSNSITYNTYLASSVRVFDSTFDQSFA
Ga0335027_0012277_793_1068F010464AGGVNLIETTIVGSVAAIVGGAVAWFTKGRVESDSLQVRQAQAVLAMWQATSENQNKELTQLRNEVVSLRQRLEDMEQLVHSLQAENAKLKNLV
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