NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0003222

Scaffold Ga0335027_0003222


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0003222 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14363
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000671Metagenome / Metatranscriptome945Y
F006846Metagenome / Metatranscriptome363Y
F011394Metagenome / Metatranscriptome291Y
F016396Metagenome / Metatranscriptome247Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0003222_12933_13247F006846N/ALIAISEAKSAAKRETMINFVEKYLMRPKRLREAIQAVVRENDELLRALKEYEEQGPTNLTWSEGDMWYGWTYNPEKKRFYFDDIGNKSLMGLWEDQWARESDNQ
Ga0335027_0003222_6042_6356F011394GAGGMENNHFQHGINLWTGEPDKPVFYTKEMARKLREVKKPANDLQMDIVEYPEFLAIRLYEDNFSQYDGSLKLRVIDYVEMIKKIIESYGVRCELEGKPGERKLRNN
Ga0335027_0003222_6534_6770F000671AGAAGGMEKILCYSCNKTKNKLNVRKSVLLPINLLMCETCITSKVEPRWVVILAGRQGGPDAVREFVLKKRYIGNEISASELLV
Ga0335027_0003222_8031_8201F016396AGAAGGLRKSERLRLLEMQVVRLEMLIDLYSVTLNNLLESQGMEKPALDAGKWYQKKLDGLK
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