NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0001412

Scaffold Ga0335027_0001412


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0001412 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20737
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (83.87%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036236Metagenome / Metatranscriptome170N
F067742Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0001412_19028_19288F036236AGGMKKAQDVAGRIIALFLTNALGVITGASVIAPELELWKAAALAGAVSVFKVVESLARASVDGTLTKDEIDAAFGATPKKIAAKKAAK
Ga0335027_0001412_19285_19791F067742AGGMKRPYTGNKDGAATGEHPQLTALIKELTKAYSPALWSNGSWGVRNMRGKESLSVHATGRAVDISWRNMGDGKRGVAQGGRKYAMEAMDYLVKHADALGVEMIIDYFPPPHGRAAKCDRDMAWQKYTKATVSGAPSGDWFHLEVDGKKSSEQIKAVFAANPPAKVIVGA

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