NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0000012

Scaffold Ga0335027_0000012


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0000012 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)200303
Total Scaffold Genes234 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)136 (58.12%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022365Metagenome / Metatranscriptome214Y
F048987Metagenome / Metatranscriptome147Y
F071157Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0000012_119069_119314F048987GGAGMKLTSQLLKQIIMEEVAKFGDMESTEDRAKDAEEVDADEFGSDKSLEKKLDYMKALKIEEGRLRRRLEKVVETRKRVARSL
Ga0335027_0000012_19470_19772F022365N/AMRRRQQKQYNVAELQPDELNTLRSLVKEFVLKIESVDNEIELLKSDRKELIEEYSEKLDLKVLQAAMKVVKIKQGVEHRDTFDLFMEVLEPETTLEMSQQ
Ga0335027_0000012_53094_53351F071157AGGMSYKISDTVAMRMIQIFQEALLLGVDGADLMRQVRLVVDSNNPDTVTLDPEYEKQVAEMHKKYLDEAEALKAKQAGTSVPLIFEN
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