NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335012_0010347

Scaffold Ga0335012_0010347


Overview

Basic Information
Taxon OID3300034093 Open in IMG/M
Scaffold IDGa0335012_0010347 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5600
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049628Metagenome / Metatranscriptome146N
F059968Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0335012_0010347_4006_4284F049628N/ALDERGRLDGHSMKFEEVIQPLMHGKPITRACFDHDVYIRYSDLFESFVMHTGDESKTLQGLTLDPESMFADDWMHGEFHPVKDEITWTQTKS
Ga0335012_0010347_4438_5058F059968AGGMGCAWCFYFEGEIKVAKYPTIEERAMLLMKIKELRDAGNSISRTAQIMKVTRGTVQRWINEGRPEREVKKMDPYISFDEKTAIVIKWAELIASGASRIKAAETVGYPTMMLNRWLMSEPALRVEFQECVGKQQNNWGGRKSFEQILQPIRDGKAVQRDGARWKVQLVDSALMRYELDGANTWRCKGFATFSGPDVLARDWTIIDEV
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