Scaffold Ga0335010_0023373

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335010_0023373

Scaffold Ga0335010_0023373

Overview

Basic Information
Taxon OID	3300034092 Open in IMG/M
Scaffold ID	Ga0335010_0023373 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4799
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (10.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F080936	Metagenome	114	Y
F094990	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335010_0023373_1745_2389	F080936	N/A	MQQSNISTLSLLAICLFLLLLLMRTCGALGEAESNAMYLDSLNNEYAVRIARDSSKIHSQGVQLAAAGTKLRALELKEPEVVIRYQTRTKVVTQVELGETVYIDSFPHLRLPRTFHRPGKWLEIGGQISRAGRLQLDSIIIPVSYTVAIGDTLRKGFLSRKRERVVRLGIDNPYVTVTGMNNIIVAEPPKKWYETRAFAFALGGLVGVAIGRAK
Ga0335010_0023373_3_593	F094990	N/A	MNSIAKITIPIEKLYQSINSPETLNAQRLTANIQPIESPNQYTAASNAIAQVNSAVKAIQDARKMVTGPLDAYKKELMRIESDATEPLQAFIASTKAEMLKYTAELNRKQQEEQRLIQEQASSMAALTDQLAEVSIQHSHIKGIRTIRRTRITGEVDWMKVLSVLFGSGMYKPEDLTQNLLKAMEKCGVTAIAGIEI

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