| Basic Information | |
|---|---|
| Taxon OID | 3300034090 Open in IMG/M |
| Scaffold ID | Ga0326723_0016587 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2975 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: New York | |||||||
| Coordinates | Lat. (o) | 42.3286 | Long. (o) | -76.4792 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001574 | Metagenome / Metatranscriptome | 669 | Y |
| F002616 | Metagenome / Metatranscriptome | 543 | Y |
| F031982 | Metagenome / Metatranscriptome | 181 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326723_0016587_1724_2173 | F001574 | N/A | MSQIEVVRQNKWDELMSSLKFSILALDGLRAGGLVRTAAEKFVGAWLACFLVMARGDFLAAFSLEHARLASVCGIVGAAVSVALLAQMDRTTNSVARQATISAFATFIGDVFAHPSHFPPQWAEPLVTAVVSAGIATALWHAKRWAKSL |
| Ga0326723_0016587_393_539 | F031982 | AGGAG | MMKFLSTLEEEDLLTYEVSDDALETAGGNEIARNYTLAACTGLSVCPG |
| Ga0326723_0016587_580_759 | F002616 | GGAGG | VSNSFLNRTSRVAIAGRIAECRRPQNWNELTIPGDYHLPFGKAEAQAKAARWLWQSSII |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |