NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335020_0071412

Scaffold Ga0335020_0071412


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0071412 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1794
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019600Metagenome / Metatranscriptome228N
F031767Metagenome / Metatranscriptome181N
F033705Metagenome / Metatranscriptome176N

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0071412_1128_1514F019600N/AMYAPDTDTVELKMGHNLEKSLKEARETVYEGRKAIEELTSSITQLVYEEDRRRKEFTEVLSTIQAVLDTFQNKSITVYWRHKEDAILTSNLKALNSEILKATSLVSSSDIEEMKEIIEDLANWELNEQ
Ga0335020_0071412_1481_1792F033705N/AQGLEAAEVLKLHLVSLIKEEANRLRNLKLKLNSIRKLVEVNQANSRKLVQIFQEDQNIMPLVAKFITILTELDEISACNTISEMIGVLNKITECMLQIQIQLN
Ga0335020_0071412_734_1138F031767GGAMNNNSNNQQKIIVKRLERKPRQNYVKTLASLKNIVEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISSRLIRISDMKNLEEKERLLYYLKVEIALETLHNEKYQKKNVSTNENS

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.