Basic Information | |
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Taxon OID | 3300034082 Open in IMG/M |
Scaffold ID | Ga0335020_0071412 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1794 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F019600 | Metagenome / Metatranscriptome | 228 | N |
F031767 | Metagenome / Metatranscriptome | 181 | N |
F033705 | Metagenome / Metatranscriptome | 176 | N |
Protein ID | Family | RBS | Sequence |
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Ga0335020_0071412_1128_1514 | F019600 | N/A | MYAPDTDTVELKMGHNLEKSLKEARETVYEGRKAIEELTSSITQLVYEEDRRRKEFTEVLSTIQAVLDTFQNKSITVYWRHKEDAILTSNLKALNSEILKATSLVSSSDIEEMKEIIEDLANWELNEQ |
Ga0335020_0071412_1481_1792 | F033705 | N/A | QGLEAAEVLKLHLVSLIKEEANRLRNLKLKLNSIRKLVEVNQANSRKLVQIFQEDQNIMPLVAKFITILTELDEISACNTISEMIGVLNKITECMLQIQIQLN |
Ga0335020_0071412_734_1138 | F031767 | GGA | MNNNSNNQQKIIVKRLERKPRQNYVKTLASLKNIVEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISSRLIRISDMKNLEEKERLLYYLKVEIALETLHNEKYQKKNVSTNENS |
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