| Basic Information | |
|---|---|
| Taxon OID | 3300034082 Open in IMG/M |
| Scaffold ID | Ga0335020_0005795 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7854 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006468 | Metagenome / Metatranscriptome | 372 | Y |
| F012328 | Metagenome / Metatranscriptome | 281 | Y |
| F026827 | Metagenome / Metatranscriptome | 196 | Y |
| F100336 | Metagenome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335020_0005795_3_734 | F006468 | AGG | MLDIKNIPVDNINQNRTMNARFVRMKNQMDVKMASYLRYLGTKNAVNRASDYHYLCLAVTDSTAPVNGIDYIHPSVKPVVDYATAVVAKGLMPNGEINFEFVADTEEDEIAARQATDMVHKVVNQMNDPHFILERWIMDAMMHKNGMMMIKPIREPITRYVETQGTNDQLRAFEQQAAESGLTTLRQSKRKISVEMDKVIAEVQQLVGEQQGELAKTMVESRMNSMMEMPEDMDPEMMAMEQQE |
| Ga0335020_0005795_5285_5584 | F100336 | GGA | MNDVRDTMIHQAREDAKVKDTLILQKINASHRVAFAEKFPGQCEHILRLLTERLQAGLDKRDGVLIEDTSTWKLSPEELKDLSKALEAIYFVHKSLKAE |
| Ga0335020_0005795_5581_6399 | F012328 | N/A | MKGNYMNRKTTTTDNTWDIAPIPQDPIDIVEEVKQEKLKSKKQIVEDKSILTHPEFDIDGLMTDFPTATELERFVYDQTGIVLNLKGRANKLKYQIAMDVLNGVEVDPKFTGSDNPYIDRTELVPIDPLKIVPERDKTLPSITDVQNTFYVPTFPHPDEEARAKDMKCHMVFRKYKNGMISYEILGPLQERPVGEKIDKFGRVRPEVIKWFDPRSGEQVVQREDGTLTPTGKKLRGTMQTYRVNKSNQWEVWVDREFISLNDAVRNNPWDLQ |
| Ga0335020_0005795_6593_6892 | F026827 | AGGA | MLNTKNPQAKEINQKRGPTTGNAGTMSKRNDFMDAKSSSSGEKSVLAKMVTDALEMRGRGQAPTINPALEGVSMNTNTGPKKNSTANGSKLPSKYKSPK |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |