| Basic Information | |
|---|---|
| Taxon OID | 3300034082 Open in IMG/M |
| Scaffold ID | Ga0335020_0005121 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8416 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (27.78%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005024 | Metagenome / Metatranscriptome | 414 | Y |
| F006107 | Metagenome / Metatranscriptome | 381 | N |
| F009398 | Metagenome / Metatranscriptome | 318 | N |
| F018915 | Metagenome / Metatranscriptome | 232 | Y |
| F032259 | Metagenome / Metatranscriptome | 180 | Y |
| F038227 | Metagenome / Metatranscriptome | 166 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335020_0005121_1895_2377 | F006107 | GGA | MNAVALRAELAVADYLAAANWSASGAGTPTCLTSYSRGLYDDPDDQDVMPNFPRLVVSTNSARPMQRTDLTCEIEIAVELQLSADDTDEAAVLTTVQVLDNLILPLFDDTGASALNAAANDASGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATT |
| Ga0335020_0005121_2374_3153 | F005024 | GAGG | MTVDSSKFDAAMKQYLLTTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGTPVGDINRKSKKTGKRVGKSRILRRVHLIAQSKEAKGGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKMIRVYNKGFSQFQSAKWKPLSKPPGYKAPKQTNGALISLANQYGLNEENVATHKGTKARGFQAVPGFNPTASVVMTAGVADNQYNRVAGIYNTAMQKAFDDETTEMVNHMTEALLANGKVLEDNGISIK |
| Ga0335020_0005121_3168_3623 | F009398 | N/A | MTTIGSSLQQGMAVLQQMLGAPMFIWQGTSIRCIPAAVNDANVPISGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGATFSRLLKEDGQFILQENSDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYNLELGAKTK |
| Ga0335020_0005121_4125_4238 | F032259 | N/A | MLAKPVKASVYAFDADKKLVGPSRVTLPAGWYVLPKK |
| Ga0335020_0005121_4246_4419 | F018915 | N/A | VNWIYQILKALLDWFRETPPTDVQHGKAPEALKSDLAGRIADLPGLPDDTGGPGPFR |
| Ga0335020_0005121_6427_6657 | F038227 | N/A | MISIGIALNRLFSGQAGGTDAPVLLRDVLREDEGFLWQEDGTSKLVITLGTFDSLLREDAGFLQQEDLFKLAIQSN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |