NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0002214

Scaffold Ga0310130_0002214


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0002214 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9369
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F002985Metagenome / Metatranscriptome515Y
F013517Metagenome / Metatranscriptome270Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0002214_1469_1591F013517N/AMFESLLATVLPVLKDILWAAAGALLTYALNKFQSQFIYET
Ga0310130_0002214_249_968F001018N/AMSNQQATTVKLEKLSVIELYQHYAALQKSLPFFTPESEELVKAELEACANLRSSKIDNIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKGLLNYLRRVLPQDTNKITGRNYQFTLVKKKELTVEVSTDPEFWHSKERELYCVTEEITTTKRVVLRSMSGEILDKRIEPKTTTKVLPNLDAIRSAYQEGQQLPSGVKVLQEYSVRSKRIFSEPRLDLVSSEYPGEFLPEDSSAD
Ga0310130_0002214_9146_9358F002985N/AMRWGVPHAITANKESNKFELIPLDSEVALNKIFSHPYRAGAQQILTWINSNDEDLACKKLQVSDEAQFRK
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