NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0001113

Scaffold Ga0310130_0001113


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0001113 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15585
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003213Metagenome500Y
F058953Metagenome134N
F105063Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0001113_11649_11882F003213GAGMSSKKINKAKRQIGDQTTKGGLIGLMIYGLNAQGVDPMLISLLVPIASSVLAWASTKVGDPDLACLFIPDDKDKPKS
Ga0310130_0001113_11879_12361F105063N/ALKPYIVANQPVVKAPLPGMDEWIRQAVKYADGCLWNNGSWVVRNMKTKGKEHLVSNHSRGLAVDLSYRWQVKQGRGKTDGEKLALVFLTKVLQHAEILGVQLVIDYNRNRSWKIDRGTWKAGNFGVGDWLHVEADPDLIKDVKAVKSAWDKVFSVIPQTL
Ga0310130_0001113_6396_7007F058953GAGMAYTARIEVHGIKEALAELNSFDPKYRRQVTKDIVAAGQKIIVSARDMIKNFDNSEGNGAPLSRMYKSKLVKGRDVYWDNNTVRAGFKVKVGAAAQRQRLVTFKDKFDPETNPRESHNVLFKAKPYQLMVIQQKDAAGAIYDHAGRRTKGIFVTNLNAEVGLEPRAIDPAVDMHKETVEREVLAVCEKVMERLNRNLQVRHGN
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