NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_078941

Scaffold Ga0310127_078941


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_078941 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1494
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011390Metagenome291Y
F033793Metagenome / Metatranscriptome176N
F081334Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0310127_078941_1195_1431F033793GAGMILGQDPFSTRPIGIEKSLKEAKAYILTRSYNNDYCAIYVADDENPAGELVGRWIIKNKKFTSYEKKPKAVDYKKQIF
Ga0310127_078941_3_257F011390GAGMKDMEITTTNYGVCKVKKHKYQTNGNLALSLVDENGEPVVYITTNIFPMAEDEFCANYYNMGATLWNDIVTSGLFEMTGEKVPSG
Ga0310127_078941_778_1149F081334GGAGMEILIKENAASNYMRRCYKGTRPDAVGLHNEGFYNILKNLQGKWVEVETTHLFANQFNTVPVEGITGTGARIDMADVAEIKDDVRHGVYKCVWCFGYDHNKDGICDRCEQSKYLSPLLPSIAK
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