NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_049571

Scaffold Ga0310127_049571


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_049571 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2114
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000141Metagenome / Metatranscriptome1941Y
F002357Metagenome / Metatranscriptome567Y
F003825Metagenome / Metatranscriptome466Y
F055535Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0310127_049571_1027_1287F000141N/AMTNPTRFKCNGCKRDTEFLWLDATEMPDGFKLYKCMDCGCVGVKNIVEAKDVDDSDVVRCGKCAAWKFKDVSCYTCQLIGEYDANI
Ga0310127_049571_199_870F002357AGGAGMAFNLNDYEDVATLNKWFISNFPLGRSDISVISHDPKEGYILIQATLWRDSSDNCPAVSNIAFGSRETYIPNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMQKVEVKSEPNQYEKKLQERRYGSPGSKSAAVEDALRASFAVENKQDDPQAWSVAEVVDQIGASTPNEPPACEHGHILKQGISKTGKPYYGYVCKGKVTEHAKWAKMTANGKWFFEGVE
Ga0310127_049571_58_195F055535N/AMALVKVSRLTETPDHYDSVKDFIAYGAIYRTVLEAVQDQNFEWKE
Ga0310127_049571_870_1043F003825AGGGGGMGYIAFINGKGLQVVMDDNGVHLEESIVKCEVCDDDRIFKDGTCFKCHELINYDKSN
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