NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_033430

Scaffold Ga0310127_033430


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_033430 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2832
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001129Metagenome / Metatranscriptome768Y
F010464Metagenome / Metatranscriptome303N
F010758Metagenome / Metatranscriptome299N
F014844Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0310127_033430_1_264F010758N/AIKPIGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPSEEWTLSSSVSLTRFVESRDDRTAGWQATMTFEIPYGHSVCEIPT
Ga0310127_033430_2549_2824F010464AGGMNLIETTIVGTIAAVVGGVVAWFTKGRFESDSLQVKQAQAVLAMWQATSENQNKELTQLRNEVVSLRNRLEEMEQLVHTLQAENAKLKNLV
Ga0310127_033430_338_568F001129AGGMEFVDAAVSGKVYDFVVVNAAATFTTLTGTGGEDLLTAYALSGKSVSAGIVISGRNGGKITAVTPSAGSVIGYTFL
Ga0310127_033430_570_749F014844N/AMLIGYGYGYPTNQLLGGVSDPALTAWNAFNARATADGATAAEAAVNGCLFVRFAAIFNF
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