NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_031256

Scaffold Ga0310127_031256


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_031256 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2978
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003267Metagenome / Metatranscriptome496N
F008024Metagenome / Metatranscriptome340N
F044457Metagenome / Metatranscriptome154N

Sequences

Protein IDFamilyRBSSequence
Ga0310127_031256_1016_1639F044457N/AMKAKTYIFCHDTDIVKQCEAEGRFRDFFPYTWVMLGFKDFEGMAEFDHIVARDEPDNIENHRNLVAWTGWYALAKNGYIKPGDVVNLFEYDLTKTGDFDQRAYCAYFRVPVDVVPYWSCGDNYEPHIKQLTGKGAKEFYQPVVPVTSNYTLTWDDSYLDLTLACIEQKLVAIPHVGHILERAYSQRFADIPYNVAAFKHAFANSHGF
Ga0310127_031256_2147_2800F003267N/AMKVVHYYHIYCGGNWQLILNQHMMAVCNYGLINVLDEIRVGIVGPPEQRKAVKEVLDNSMVADKVKVVVTRTNAWEQATLTEMYRASQEEEAVYLYAHTKGASNPALTTQLWGRSMLFFNVVAWERSLQMLEAVDAVGCHWITKEQFPHMADANNPEGYPYFGGNFWWAKSEHIRQLGEPARDHRFRAETWVGKKPDTKVFDSNPGWPSPERFVITF
Ga0310127_031256_2_409F008024N/AMKLQDLTIDQFQRIGAIEFSSVLGDYDKRIGVVSIVEGVDVSLVREMPAKSVLKRYKAIVSEWNALPALGYKRKFKAGGKWWIPTVFTDELTAGQLIELMDINTTDEKQLLQNLHRIMASLSREGGLFGFFPKKYD
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