NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_025700

Scaffold Ga0310127_025700


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_025700 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3440
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063632Metagenome129N
F065720Metagenome / Metatranscriptome127Y
F101045Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0310127_025700_1925_2185F065720AGGAMSFLSDLIIKLLRWFYELSQKDTPCEDAKKDDKLKQDLLARIDDHERKLLIESDLRAKRTAAEVSGAGQSPRVDFRLKRPSGVVKK
Ga0310127_025700_2358_2603F063632N/AMKNAIEFIGRFFQNNGHLRGALYFSIAALTPMAASFTEWSSEDGPKNWYEVVALIIGSIISGLTAIRAYLDNHLSKAKETK
Ga0310127_025700_981_1643F101045GGAGLVNLAVSLLSCDVTFNVFTELQDYTLINSAIENIPQEIKVRIWPRDLIDKTKLRRQNCEVFFIPCITLSWVQKMRMCARLAREAQEPWFGYAHDDATISSEDFNKLIEARKTVNENTYWIVTNNPKHPEINADVYALINTKNYWAIGGHDENFHIYYADIDFHIRQAQNGKGQIGVCTPSTTHIGSVVLKKLEGLQSIYYKMMLEKDKSYFKAKHPSFDI
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