NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0310127_017699

Scaffold Ga0310127_017699


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_017699 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4532
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028157Metagenome192Y
F033428Metagenome177Y
F051124Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0310127_017699_1624_2034F033428AGAAGGMSRLEGQLVADEHVSILKMRFARLDDKTRLIIREIADEAHGDISMTPPTERRVGIARILLEVAENDATIDKDLVRSICELRTGKKYNNAGLALSDLSWIDAERVWSTFQDIYADRVELEYIPVSNHYIIKEHKHVR
Ga0310127_017699_3610_3834F028157GAGGVIVQDPKFVTVMADGDGYARWVGSIDATDIMQAYRTGGVYILVMLDEEGRLSIGFKPGRHWEASWSPPITLERR
Ga0310127_017699_4027_4269F051124N/AMTKKTDILEQYVNSLGAGWCIRYVMVAIVEDASGEQNFIIQCSPDQTAAETIGLCEAVSHIQKAKIAHAWIRQETETDEE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.