NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_017450

Scaffold Ga0310127_017450


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_017450 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4583
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011293Metagenome292Y
F020893Metagenome221Y
F023579Metagenome209N
F049592Metagenome146N

Sequences

Protein IDFamilyRBSSequence
Ga0310127_017450_1413_1688F049592GAGMAGLDKPLVLVVWHDAHTLDNDNWYDESDLKDTPCVVHSVGYRISKPNARHLCLAQSITDEQGSDNVLFIPARMVRKVIKLQIPHKRRKTR
Ga0310127_017450_2231_2467F023579GAGMCLPDVVGDNGDSFGLMQIHTPSWCKPNKYWPRGYLQTQGMINDCTELFDPLTNLWVAWHIATKYGWDNWSTYDRVVG
Ga0310127_017450_2539_2913F011293N/AMTMSSSNIDPGDAAYRAWQLTKGDRMAQYGHPFDDYTRVRRIFGSFTNFHHNLSTQEAIMFMVCVKLARLWKSLEEGKMHEDSLVDAIGYLNCLHMADARDQLLDAPLHVVGDMAIYRDEPTEA
Ga0310127_017450_2_268F020893N/AQNQYQPECSNGWTLMPTEIYVALISAVAIVSAAVLPAILIERARRENADDHAYVRKILSRVERKIDNHLEDHDNGTTRRNTAKTKQSG
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