NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_017015

Scaffold Ga0310127_017015


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_017015 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4670
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F012108Metagenome / Metatranscriptome283Y

Sequences

Protein IDFamilyRBSSequence
Ga0310127_017015_1051_1755F000325GGAGMKVANGNDKLGKGCLVVSRPVGDTCPSSCAFLGNGCYAEQTEKMYPNVRPAGMQNLITERGRIRAMILDAKRQGKSIRWHERGDWFLNGELDTNYVENVTWACESILADGDSLPDMWFYTHIYDSRLVDMGKYMNVYASIHNADDYKSAKSAGFQLFAWCDSDMKIAPKRPRSKAKADAWRQALPKLVVLEGEKYVTCPEIRRGRGVVTCTPTKGSVSCDLCVRGLANVLFPSH
Ga0310127_017015_3657_4028F012108AGCAGGMIKIELTVREAMDLAIYCPPEMREKIVTALEVVLGENQRRKVTITGGMNLDNRIPCIKAIRLHSGWGLKEAKDWTDVLVGGWKYDKFVPASYGTKQSITLKSPEAAENLLRDLAGLGCEGFLS
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